admix.io.read_rfmix#

admix.io.read_rfmix(path: str, df_snp: DataFrame, df_indiv: DataFrame)[source]#

Assign local ancestry to a dataset. 2-way, 3-way admixture are all supported.

Parameters:

  • lanc_file (str) – Path to local ancestry data.

  • geno (xr.DataArray) – genotype matrix

  • df_snp (pd.DataFrame) – SNP data frames

Returns:

lanc (da.Array) – Local ancestry array