admix.plot.manhattan#

admix.plot.manhattan(pval, chrom=None, pos=None, axh_y=7.301029995663981, s=0.1, label=None, ax=None, color='#3b76af')[source]#

Manhatton plot of p-values

Parameters:

  • chrom (np.ndarray) – array-like

  • pval (np.ndarray) – p-values, array-like

  • pos (np.ndarray) – array-like, position for each SNP, if provided, position will be used

  • axh_y (np.ndarray, optional) – horizontal line for genome-wide significance, by default -np.log10(5e-8)

  • s (float, optional) – dot size, by default 0.1

  • ax (matplotlib.axes, optional) – axes, by default None